|
The folding of apomyoglobin has received intense scrutiny.
The protein is relatively simple, and it serves as an archetype
for folding of proteins which are small, single-domain, and
globular. The holoprotein contains 153 residues organized into
eight strands of mostly a-helical
segments, labeled A-H. Near neutral pH, apoMb adopts a structure
that is native-like according to the available NMR, CD and calorimetric
evidence. The relaxation kinetics of native-ApoMb in response
to a T-jump are shown above. The solvated helical substructure
exhibits a relaxation time typical of isolated helices (blue
trace) such as the model peptide described previously. This
is the case even though these helices may be in contact with
each other, held together by loose hydrophobic forces. Thus,
the a -helical secondary structures
can be formed early on the folding pathway of apoMb, on the
time scale of tens of nanoseconds. In contrast, the relaxation
time observed for the native helices of ApoMb-N (monitored at
1650 cm-1) is some three orders of magnitude slower
(green trace), analogous to the relaxation rate of the coiled-coil
structure of GCN4-p1 (green trace). This slower relaxation is
not limited by the intrinsic helix formation rate, but rather
reflects the slower rates of the melting and formation of helix-helix
and sidechain packing interactions.
|